#------------------------------------------------------------------------------ #$Date: 2019-11-08 03:36:55 +0200 (Fri, 08 Nov 2019) $ #$Revision: 225122 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/15/69/7156911.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7156911 loop_ _publ_author_name 'Schulze, Daniel' 'Traber, Juliane' 'Ritter, Marcel' 'G\"orls, Helmar' 'Pohnert, Georg' 'Westerhausen, Matthias' _publ_section_title ; Total syntheses of the bilirubin oxidation end product Z-BOX C and its isomeric form Z-BOX D. ; _journal_issue 26 _journal_name_full 'Organic & biomolecular chemistry' _journal_page_first 6489 _journal_page_last 6496 _journal_paper_doi 10.1039/c9ob01117j _journal_volume 17 _journal_year 2019 _chemical_formula_moiety 'C10 H12 N2 O4' _chemical_formula_sum 'C10 H12 N2 O4' _chemical_formula_weight 224.22 _space_group_IT_number 14 _space_group_name_Hall '-P 2yn' _space_group_name_H-M_alt 'P 1 21/n 1' _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2019-05-13 deposited with the CCDC. 2019-06-07 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 110.854(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 7.8544(3) _cell_length_b 14.0260(6) _cell_length_c 9.9668(4) _cell_measurement_reflns_used 13375 _cell_measurement_temperature 133(2) _cell_measurement_theta_max 27.47 _cell_measurement_theta_min 2.63 _cell_volume 1026.07(7) _computing_cell_refinement DENZO _computing_data_collection COLLECT _computing_data_reduction DENZO _computing_molecular_graphics SHELXTL/PC _computing_publication_material SHELXL-97 _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 133(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method 'phi- + omega-scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0413 _diffrn_reflns_av_sigmaI/netI 0.0269 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 13375 _diffrn_reflns_theta_full 27.47 _diffrn_reflns_theta_max 27.47 _diffrn_reflns_theta_min 2.63 _exptl_absorpt_coefficient_mu 0.114 _exptl_absorpt_correction_T_max 0.7456 _exptl_absorpt_correction_T_min 0.6291 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS, Bruker-AXS, 2002' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.451 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 472 _exptl_crystal_size_max 0.110 _exptl_crystal_size_mid 0.108 _exptl_crystal_size_min 0.102 _refine_diff_density_max 0.352 _refine_diff_density_min -0.191 _refine_diff_density_rms 0.046 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.115 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 193 _refine_ls_number_reflns 2339 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.115 _refine_ls_R_factor_all 0.0486 _refine_ls_R_factor_gt 0.0405 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0276P)^2^+0.6449P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0893 _refine_ls_wR_factor_ref 0.0937 _reflns_number_gt 2074 _reflns_number_total 2339 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c9ob01117j2.cif _cod_data_source_block FO6412 _cod_depositor_comments 'Adding full bibliography for 7156910--7156913.cif.' _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 7156911 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag O1 O 1.04002(13) 0.40626(8) 0.60783(12) 0.0268(3) Uani 1 1 d O2 O 0.60700(15) 0.12448(8) 0.47642(12) 0.0267(3) Uani 1 1 d H1O2 H 0.693(3) 0.080(2) 0.528(3) 0.068(8) Uiso 1 1 d O3 O 0.49326(15) 0.09171(8) 0.64732(12) 0.0274(3) Uani 1 1 d O4 O 0.64793(13) 0.49926(8) 0.87320(11) 0.0240(2) Uani 1 1 d N1 N 0.78112(15) 0.43179(9) 0.66393(13) 0.0185(3) Uani 1 1 d H1N1 H 0.826(3) 0.4704(15) 0.735(2) 0.036(5) Uiso 1 1 d N2 N 0.34126(18) 0.49993(10) 0.81408(14) 0.0226(3) Uani 1 1 d H1N2 H 0.349(3) 0.5260(14) 0.894(2) 0.032(5) Uiso 1 1 d N2N2 H 0.236(3) 0.4780(14) 0.756(2) 0.032(5) Uiso 1 1 d C1 C 0.87769(19) 0.39421(10) 0.58495(15) 0.0191(3) Uani 1 1 d C2 C 0.74772(19) 0.33535(10) 0.46940(14) 0.0187(3) Uani 1 1 d C3 C 0.58301(18) 0.34152(9) 0.48201(14) 0.0166(3) Uani 1 1 d C4 C 0.60001(18) 0.40312(9) 0.60691(14) 0.0164(3) Uani 1 1 d C5 C 0.8118(2) 0.28132(12) 0.36731(17) 0.0253(3) Uani 1 1 d H5C H 0.876(3) 0.3233(15) 0.323(2) 0.036(5) Uiso 1 1 d H5B H 0.710(3) 0.2504(15) 0.292(2) 0.043(6) Uiso 1 1 d H5A H 0.897(3) 0.2294(16) 0.418(2) 0.045(6) Uiso 1 1 d C6 C 0.40896(19) 0.29267(10) 0.39391(15) 0.0192(3) Uani 1 1 d H6B H 0.309(2) 0.3387(12) 0.3608(18) 0.021(4) Uiso 1 1 d H6A H 0.426(2) 0.2658(13) 0.3076(19) 0.024(4) Uiso 1 1 d C7 C 0.34976(19) 0.21386(10) 0.47591(16) 0.0212(3) Uani 1 1 d H7B H 0.310(2) 0.2393(13) 0.553(2) 0.027(4) Uiso 1 1 d H7A H 0.243(2) 0.1796(13) 0.4090(19) 0.029(5) Uiso 1 1 d C8 C 0.49003(19) 0.13774(10) 0.54334(15) 0.0198(3) Uani 1 1 d C9 C 0.46521(18) 0.42507(10) 0.65553(15) 0.0172(3) Uani 1 1 d H9 H 0.345(2) 0.4031(13) 0.6012(19) 0.025(4) Uiso 1 1 d C10 C 0.49149(18) 0.47864(10) 0.78803(15) 0.0180(3) Uani 1 1 d loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0158(5) 0.0367(6) 0.0302(6) -0.0062(5) 0.0111(4) -0.0028(4) O2 0.0292(6) 0.0261(6) 0.0303(6) 0.0074(5) 0.0175(5) 0.0091(5) O3 0.0268(6) 0.0312(6) 0.0274(6) 0.0071(5) 0.0136(5) 0.0026(4) O4 0.0175(5) 0.0294(6) 0.0241(5) -0.0087(4) 0.0063(4) -0.0033(4) N1 0.0144(6) 0.0230(6) 0.0184(6) -0.0039(5) 0.0062(4) -0.0015(4) N2 0.0188(6) 0.0290(7) 0.0221(6) -0.0072(5) 0.0100(5) -0.0012(5) C1 0.0183(7) 0.0201(7) 0.0198(6) 0.0010(5) 0.0082(5) 0.0010(5) C2 0.0211(7) 0.0188(6) 0.0177(6) 0.0007(5) 0.0088(5) 0.0006(5) C3 0.0179(7) 0.0161(6) 0.0159(6) 0.0014(5) 0.0060(5) 0.0013(5) C4 0.0163(6) 0.0159(6) 0.0163(6) 0.0021(5) 0.0048(5) 0.0002(5) C5 0.0256(8) 0.0276(8) 0.0276(8) -0.0055(6) 0.0155(6) -0.0015(6) C6 0.0178(7) 0.0203(7) 0.0180(6) -0.0006(5) 0.0045(5) 0.0011(5) C7 0.0180(7) 0.0207(7) 0.0245(7) -0.0012(6) 0.0073(6) -0.0014(5) C8 0.0183(7) 0.0197(7) 0.0216(7) -0.0028(5) 0.0072(5) -0.0036(5) C9 0.0151(6) 0.0183(6) 0.0177(6) 0.0001(5) 0.0051(5) 0.0000(5) C10 0.0179(6) 0.0173(6) 0.0193(6) 0.0014(5) 0.0075(5) 0.0002(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C8 O2 H1O2 108.6(16) C1 N1 C4 110.31(12) C1 N1 H1N1 123.9(13) C4 N1 H1N1 125.6(13) C10 N2 H1N2 120.3(13) C10 N2 N2N2 119.1(13) H1N2 N2 N2N2 119.7(18) O1 C1 N1 126.12(13) O1 C1 C2 127.07(13) N1 C1 C2 106.80(12) C3 C2 C1 108.02(12) C3 C2 C5 131.65(13) C1 C2 C5 120.32(13) C2 C3 C4 108.29(12) C2 C3 C6 128.40(13) C4 C3 C6 123.25(12) C9 C4 N1 127.41(13) C9 C4 C3 126.02(12) N1 C4 C3 106.57(11) C2 C5 H5C 110.8(12) C2 C5 H5B 111.4(12) H5C C5 H5B 109.3(16) C2 C5 H5A 110.8(12) H5C C5 H5A 107.8(16) H5B C5 H5A 106.5(17) C3 C6 C7 113.63(11) C3 C6 H6B 110.5(10) C7 C6 H6B 107.2(10) C3 C6 H6A 107.6(10) C7 C6 H6A 110.4(10) H6B C6 H6A 107.4(14) C8 C7 C6 115.66(12) C8 C7 H7B 107.0(10) C6 C7 H7B 112.9(10) C8 C7 H7A 105.5(11) C6 C7 H7A 109.5(10) H7B C7 H7A 105.6(14) O3 C8 O2 123.17(13) O3 C8 C7 123.13(13) O2 C8 C7 113.69(12) C4 C9 C10 124.29(13) C4 C9 H9 117.7(11) C10 C9 H9 118.0(11) O4 C10 N2 122.69(13) O4 C10 C9 121.13(12) N2 C10 C9 116.11(12) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.2244(17) O2 C8 1.3266(18) O2 H1O2 0.93(3) O3 C8 1.2136(17) O4 C10 1.2536(17) N1 C1 1.3776(18) N1 C4 1.3902(17) N1 H1N1 0.86(2) N2 C10 1.3293(18) N2 H1N2 0.86(2) N2 N2N2 0.88(2) C1 C2 1.4876(19) C2 C3 1.346(2) C2 C5 1.492(2) C3 C4 1.4818(19) C3 C6 1.5016(19) C4 C9 1.3475(19) C5 H5C 0.98(2) C5 H5B 0.99(2) C5 H5A 1.00(2) C6 C7 1.542(2) C6 H6B 0.976(17) C6 H6A 0.992(18) C7 C8 1.509(2) C7 H7B 0.992(19) C7 H7A 0.991(19) C9 C10 1.4686(19) C9 H9 0.956(18)